microscopy-data

Automated batch processing of cell and tissue microscopy image data in Napari

Deep Zoom Plate Viewer for microscopy images

The Light Microscopy (LiMi)-Model is a tiered system of metadata specifications for documenting microscopy experiments and assessing the quality of instruments and mage data.

#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

This is the React implementation of Micro-Meta App, Microscopy Metadata for the real world!

🧪 Reproducing the concept of Confocal Laser Scanning Microscope. Using Arduino and easily found materials. Generating images in Grayscale just for fun.

Electron wrapped, stand-alone version of Micro-Meta App, microscopy metadata for the real world!

Scientific software for analysis of confluent cell dynamics.

This repository contains software that was developed to add metadata annotations to bioimage data before importing it into OMERO

Open Jupyter Notebooks and Models for Lithium-Ion Battery QA using XCT

#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology

This is a limited-functionality, beta - implementation of the integration of Micro-Meta App in the OMERO.web client

Nuclear Morphology and Chromatin Organization Features

This repository contains software that was developed for the management of bioimage data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.

This is a converter written in Java that translates an XSD microscopy metadata schema into JSON

This repository contains sofware that was created for the automatic image data management of image data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.

Repository for an automated microscopy image analysis pipeline (CryptoClassifier), using ImageJ.

This repository contains Python software that was created to explore file system directories and automatically collect the names of image data files to be annotated with experimental and sample preparation metadata and imported into OMERO.

Example workflows for image processing, segmentation and analysis. Stitching and alignment functions also implemented.

4DN-BINA-OME-QUAREP Microscopy Glossary