confocal

🧪 Reproducing the concept of Confocal Laser Scanning Microscope. Using Arduino and easily found materials. Generating images in Grayscale just for fun.

Batch processing of PicoQuant PTU files into multicolor fluorescent images. Application is meant for fast screening of images and Z-stacks during experiments. 2D_PicoQuant_ImageScreen processes intensity only, lifetime is not used.

Conversational confocal microscopy assistant — napari + LLM tool use

Condensate detection and quantification for confocal microscopy of ER liquid‚Äìliquid phase separation. Olympus .oir ‚lossless TIFF ‚ LoG + watershed detection ‚ per-cell counts, sizes and IN/OUT ratios.

Processing penetration profile of gelatin nanosponge to biofilm using Jupyterlab

Creates .mat files to correspond to confocal videos. Used mainly for bin converted avis

macOS LIF to TIFF extractor for Leica confocal files

ImageJ confocal microscopy data processing and analysis pipeline