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whonet
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Open-source, event-driven antimicrobial resistance (AMR) surveillance and clinical stewardship platform — real-time AST ingestion, EUCAST/CLSI classification, outbreak detection (CUSUM + BOCPD), and LLM-assisted empiric therapy recommendations.
react python bioinformatics typescript kafka neo4j surveillance healthcare public-health amr glass claude clinical-decision-support timescaledb antimicrobial-resistance fastapi antibiotic-stewardship whonet clsi eucast
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Jul 20, 2026 - Python
R workflow for AMR surveillance: cleans lab and WHONET exports, interprets MIC/disk values (EUCAST/CLSI), prints a CLSI M39 cumulative antibiogram, flags MRSA/VRE/CRE, and validates against real NCBI isolates.
r surveillance public-health rstats amr epidemiology microbiology antimicrobial-resistance infection-control antibiogram whonet clsi eucast
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Updated
Oct 24, 2026 - R
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