The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
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Updated
Jul 20, 2026 - C++
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
IQ-TREE software version 2: phylogenetics by maximum likelihood
Single-cell analysis in Python. Scales to >100M cells.
Oxford Nanopore's Basecaller
Foundation Models for Genomics & Transcriptomics
A comprehensive library for computational molecular biology
bedtools - the swiss army knife for genome arithmetic
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
The second version of the Kraken taxonomic sequence classification system
Official git repository for Biopython (originally converted from CVS)
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