structural-biology

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

Protein Graph Library

BoltzGen: Toward Universal Binder Design

A comprehensive library for computational molecular biology

A dependency-free cross-platform swiss army knife for PDB files.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

macromolecular crystallography library and utilities

An all-atom protein structure dataset for machine learning.

Terminal protein structure viewer — interactive 3D visualization of PDB/mmCIF structures with cartoon ribbons, braille rendering, and Sixel/Kitty graphics

C-library for calculating Solvent Accessible Surface Areas

RiboNucleic Acid (RNA) Language Model

PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.

A curated list of awesome computational cryo-EM methods.

Calculation of interatomic interactions in molecular structures

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

VSCode Extension for interactively visualising protein structure data in the editor

Predicting protein structure through sequence modeling

This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the University of Milano, originally inspired by https://github.com/pb3lab/ibm3202

A Python framework for structural systems biology