Simplified model of mTOR written using PySB. mTOR is modeled such that its activation is due to insulin receptor activation, and inhibited by binding of rapamycin-FKBP complex.
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Dec 6, 2022 - Python
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mtor
Here are 8 public repositories matching this topic...
Open-source research on the ecological and biochemical mechanisms of regeneration. Models the interaction between Basidiomycete metabolites, mTOR/AMPK/SIRT1 signaling, and TP53/autophagy balance — bridging ecology, computation, and cellular longevity.
regenerative-medicine elephants quantum-biology computational-consciousness mtor neuromorphic-intelligence future-of-biology fungal-biotechnology cellular-longevity
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Oct 20, 2025 - Python
Python-powered provenance-first atlas of mTOR signaling with disease overlays, inhibitor annotations, and fail-closed AI research triage.
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Jun 1, 2026 - Python
Curated interaction graph of the mTOR signalling pathway (mTORC1/mTORC2) with a Python package, figures and an interactive explorer
bioinformatics systems-biology networkx knowledge-graph network-biology mtor mtorc1 signalling-pathway mtorc2
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Oct 17, 2026 - HTML
Claude Code plugin and Gemini CLI extension for Oliver's mTOR Atlas (read-only MCP server)
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Oct 7, 2026
MTOR sequence-to-structure bioinformatics case study covering biological databases, variants, evolutionary analysis, structure, and pathway interpretation.
bioinformatics protein-structure computational-biology ensembl biopython ncbi sequence-analysis mtor
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Oct 3, 2026 - Python
Metabolic Calculator
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Oct 21, 2026 - HTML
Oliver's mTOR Atlas: the mTOR pathway, mapped by what the evidence can actually carry. 400+ curated studies, each labelled by the kind of study behind it (human, animal, molecular), linked to genes, drugs and diseases.
bioinformatics biology pubmed open-science dataset knowledge-graph molecular-biology longevity autophagy evidence-based-medicine signaling-pathway aging-biology mtor curated-dataset rapamycin
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Oct 31, 2026 - HTML
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