itol

Helper Functions for Interactive Tree Of Life (iTOL)

Gotree: a set of command line tools and an API to manipulate phylogenetic trees.

Auditable agent skill for resolving protein queries, selecting references, and planning reproducible phylogenetic trees.

A Python CLI tool for iTOL phylogenetic tree visualization automation

as itol

PyiTOL Studio is the desktop companion of PyiTOL: a PySide6-based macOS GUI for visually creating, editing, learning from, and batch-uploading iTOL annotation templates.

🦇🦠🌳Study on detection of Brno loanvirus in Southern Russia

Unofficial MCP (Model Context Protocol) server for iTOL phylogenetic tree visualization automation — 33 tools, works with any MCP client. Community project, not affiliated with iTOL/EMBL.

16sRNA Microbial Profiling R scripts to find most significant OTUs in 16RNA data after data normalization, followed by ordination and clustering and then plotting iTOL

Research about HBB gene for the Bioinformatics Laboratories class. Second Semester of the First Year of the Bachelor's Degree in Bioinformatics at FCUP.

This project is part of the course of Computational Microbial Genomics, held by Nicola Segata (A.Y. 2021-2022) @ University of Trento.

Scripts I wrote as a graduate research assistant while working on the Wyeomyia smithii Genome project for Dr. Elizabeth Cooper's Lab at UNC Charlotte

Package to create iTOL config files

🌐 Official Web Portal — Suleiman MEGA Molecular Evolutionary Tree. 🔒 Raw research datasets are Private (Request access: suleyman.hacizade1@gmail.com)