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1. OmicsDesk OmicsDesk Public

   OmicsDesk: A modular R toolkit for clustering, annotation, trajectory analysis, and spatial mapping of single-cell and spatial transcriptomics datasets

   R 2

2. SimOmics SimOmics Public

   SimOmics: Simulation toolkit for generating synthetic multi-omics data with latent structure and block-wise correlation

   TeX 2

3. HybridQC HybridQC Public

   HybridQC: An R package for hybrid quality control of scRNA-seq data using basic metrics and machine learning-based outlier detection.

   HTML 1

4. deeprouter-io/deeprouter deeprouter-io/deeprouter Public

   LLM gateway & AI asset management platform — the DeepRouter API gateway (fork of New API).

   Go 1 1

5. amrscan amrscan Public

   AMRScan: Nextflow workflow for AMR determinant calling with AMRFinderPlus, provenance and harmonized output, plus an NCBI Pathogen Detection AST dataset builder

   HTML

6. ngs-panel-validation ngs-panel-validation Public

   Validation and change control of a germline NGS panel pipeline (BWA-MEM, GATK) against GIAB reference samples, documented the way a diagnostic laboratory would

   Python