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@seung-lab

Seung Lab

Researching connectomics at the Princeton Neuroscience Institute.

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 465 51

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 269 42

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 221 30

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 176 54

  5. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    Python 122 33

  6. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 95 32

Repositories

Showing 10 of 190 repositories
  • crackle Public

    3D dense segmentation compression codec based on crack codes.

    seung-lab/crackle's past year of commit activity
    C++ 18 BSD-3-Clause 1 11 2 Updated Oct 18, 2026
  • ng-extend Public
    seung-lab/ng-extend's past year of commit activity
    JavaScript 6 8 3 29 Updated Oct 18, 2026
  • connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    seung-lab/connected-components-3d's past year of commit activity
    C++ 465 LGPL-3.0 51 15 3 Updated Oct 17, 2026
  • gaara Public

    Skeleton extraction via voxel thinning for multi-teravoxel scale images using sand based attacks.

    seung-lab/gaara's past year of commit activity
    C++ 4 BSD-3-Clause 0 0 0 Updated Oct 17, 2026
  • fastmorph Public

    Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.

    seung-lab/fastmorph's past year of commit activity
    C++ 19 LGPL-3.0 3 2 0 Updated Oct 16, 2026
  • osteoid Public

    Skeleton object used for representing neurons, adjacent cells, and organelles.

    seung-lab/osteoid's past year of commit activity
    C++ 4 BSD-3-Clause 1 2 1 Updated Oct 16, 2026
  • fastremap Public

    Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.

    seung-lab/fastremap's past year of commit activity
    C++ 65 LGPL-3.0 10 3 1 Updated Oct 16, 2026
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer's past year of commit activity
    TypeScript 25 Apache-2.0 423 91 41 Updated Oct 15, 2026
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    seung-lab/cloud-volume's past year of commit activity
    Python 176 BSD-3-Clause 54 86 7 Updated Oct 15, 2026
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    seung-lab/igneous's past year of commit activity
    Python 69 GPL-3.0 24 28 3 Updated Oct 12, 2026
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