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@saalfeldlab

Saalfeld Lab

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  1. n5 n5 Public

    Not HDF5

    Java 213 23

  2. paintera paintera Public

    Kotlin 120 19

  3. render render Public

    Render transformed image tiles

    Java 37 35

  4. bigwarp bigwarp Public

    A tool for manual pointwise deformable registration using bigdataviewer.

    Java 37 14

  5. stitching-spark stitching-spark Public

    Reconstruct big images from overlapping tiled images on a Spark cluster.

    Java 34 11

  6. n5-zarr n5-zarr Public

    Zarr filesystem backend for N5

    Java 24 19

Repositories

Showing 10 of 119 repositories
  • render Public

    Render transformed image tiles

    saalfeldlab/render's past year of commit activity
    Java 37 GPL-2.0 35 29 3 Updated Oct 21, 2026
  • n5-universe Public

    Functionality shared across all n5

    saalfeldlab/n5-universe's past year of commit activity
    Java 2 BSD-2-Clause 7 8 5 Updated Oct 21, 2026
  • bigwarp Public

    A tool for manual pointwise deformable registration using bigdataviewer.

    saalfeldlab/bigwarp's past year of commit activity
    Java 37 GPL-2.0 14 43 2 Updated Oct 21, 2026
  • csub Public

    submits jobs to an LSF cluster from inside a sandbox, and runs those jobs in a sandbox too

    saalfeldlab/csub's past year of commit activity
    Python 1 2 0 1 Updated Oct 19, 2026
  • n5-ij Public

    ImageJ convenience layer for N5

    saalfeldlab/n5-ij's past year of commit activity
    Java 22 BSD-2-Clause 13 30 (1 issue needs help) 2 Updated Oct 17, 2026
  • n5-hdf5 Public

    Best effort N5 implementation on HDF5 files (despite the irony).

    saalfeldlab/n5-hdf5's past year of commit activity
    Java 6 BSD-2-Clause 11 5 3 Updated Oct 17, 2026
  • n5-factory Public

    Create N5Reader/Writer for all backends and formats

    saalfeldlab/n5-factory's past year of commit activity
    Java 0 BSD-2-Clause 0 0 0 Updated Oct 17, 2026
  • n5-google-cloud Public

    N5 library implementation using Google Cloud Storage backend.

    saalfeldlab/n5-google-cloud's past year of commit activity
    Java 1 BSD-2-Clause 3 2 1 Updated Oct 17, 2026
  • n5-aws-s3 Public

    N5 library implementation using Amazon Web Services S3 backend.

    saalfeldlab/n5-aws-s3's past year of commit activity
    Java 5 BSD-2-Clause 7 2 1 Updated Oct 17, 2026
  • n5-zarr Public

    Zarr filesystem backend for N5

    saalfeldlab/n5-zarr's past year of commit activity
    Java 24 BSD-2-Clause 19 10 3 Updated Oct 16, 2026
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