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@ocbe-uio

Oslo Centre for Biostatistics and Epidemiology

This is where we host most of the scientific software we produce at OCBE, a joint center between the University of Oslo and the Oslo University Hospital.

OCBE's public software repository

About OCBE

The Oslo Centre for Biostatistics and Epidemiology (OCBE) is a research center at the University of Oslo, dedicated to advancing statistical methods and epidemiological research in medicine and public health. We develop innovative statistical tools and methodologies that address real-world challenges in medical research.

Research software plays a crucial role in achieving our goals by:

  • Implementing novel statistical methods that push the boundaries of biostatistical research
  • Making cutting-edge methodologies accessible to the broader scientific community
  • Striving to ensure reproducibility and transparency in research through open-source tools
  • Enabling researchers worldwide to apply advanced statistical techniques to their own data

Contributing

All our research software is open source, and we welcome all contributions from within and outside the scientific community, no matter how small. Here's how you can get involved:

  • Report bugs and request features: Visit a repository's Issues page by clicking the "Issues" tab at the top of its GitHub page to submit bug reports or feature requests
  • First-time contributors: Some repositories have a contribute page (accessible via the repository's /contribute path) listing issues that are ideal for first-time contributors
  • Code contributions: Check out our Contributing Guide for detailed information on how to submit pull requests and follow our coding standards

Documentation & Resources

Please read the main page (README file) under each repository for specific instructions on how to access that software's documentation and ask for support.

Popular repositories Loading

  1. imml imml Public

    A Python package for integrating, processing, and analyzing incomplete multi-modal datasets.

    Python 34 4

  2. BayesMallows BayesMallows Public

    R-package for Bayesian preference learning with the Mallows rank model.

    R 21 10

  3. teaching_mf9130e teaching_mf9130e Public

    Course material for MF9130E

    R 16 9

  4. DIscBIO DIscBIO Public

    A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics

    Jupyter Notebook 14 5

  5. survomics survomics Public

    Tutorial on survival modeling with omics data

    TeX 12 1

  6. rBAPS rBAPS Public

    R implementation of the BAPS software for Bayesian Analysis of Population Structure

    R 10 5

Repositories

Showing 10 of 72 repositories
  • contingencytables Public

    Statistical Analysis of Contingency Tables

    ocbe-uio/contingencytables's past year of commit activity
    R 6 GPL-3.0 3 8 (1 issue needs help) 0 Updated Oct 22, 2026
  • imml Public

    A Python package for integrating, processing, and analyzing incomplete multi-modal datasets.

    ocbe-uio/imml's past year of commit activity
    Python 34 BSD-3-Clause 4 0 0 Updated Oct 21, 2026
  • TruncExpFam Public

    R package to generate data related to the Truncated Exponential Family

    ocbe-uio/TruncExpFam's past year of commit activity
    R 0 GPL-3.0 2 2 0 Updated Oct 20, 2026
  • public-slides Public

    A repository for slides presented to the public or publicly-available slides

    ocbe-uio/public-slides's past year of commit activity
    HTML 1 CC-BY-SA-4.0 0 0 0 Updated Oct 20, 2026
  • burst Public

    Code for the BURST trial

    ocbe-uio/burst's past year of commit activity
    HTML 0 MIT 0 0 0 Updated Oct 19, 2026
  • norwelcg-public Public

    The public statistical code repository of the NORWELCG trial

    ocbe-uio/norwelcg-public's past year of commit activity
    R 0 0 0 0 Updated Oct 14, 2026
  • kids-chd Public

    Congenital Heart Disease among Children

    ocbe-uio/kids-chd's past year of commit activity
    R 0 GPL-3.0 0 3 0 Updated Sep 2, 2026
  • impress Public
    ocbe-uio/impress's past year of commit activity
    HTML 0 MIT 0 0 0 Updated Aug 19, 2026
  • acasatavi Public

    Analysis code for the clinical trial ACASA-TAVI.

    ocbe-uio/acasatavi's past year of commit activity
    R 0 0 0 0 Updated Aug 4, 2026
  • GPTCM Public

    Generalized promotion time cure model

    C++ 0 GPL-3.0 1 0 0 Updated Jul 29, 2026

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