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DOE-BRIDGE

Department of Energy's Biological and enviRonmental Infrastructure for Data manaGement and Exploration

73 followers
https://microbiomedata.org/
support@berdatacoalition.org

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nmdc-schema nmdc-schema Public

National Microbiome Data Collaborative (NMDC) unified data model

Python 53 16
docs docs Public

User-facing, web-based documentation about the NMDC

Dockerfile 3 5

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Showing 10 of 85 repositories

nmdc-server Public
Data portal client and server for NMDC.

microbiomedata/nmdc-server's past year of commit activity

Python 12 1 116 18 Updated Oct 22, 2026
nmdc-lakehouse Public

microbiomedata/nmdc-lakehouse's past year of commit activity

Python 0 MIT 1 65 2 Updated Oct 22, 2026
nmdc_notebooks Public
Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data

microbiomedata/nmdc_notebooks's past year of commit activity

Jupyter Notebook 7 CC0-1.0 1 3 0 Updated Oct 22, 2026
nmdc-mass-spec-automation Public
NMDC data processing system for metabolomics, lipidomics, and NOM data. Workflow and metadata manager.

microbiomedata/nmdc-mass-spec-automation's past year of commit activity

Python 1 1 2 2 Updated Oct 22, 2026
nmdc-schema Public
National Microbiome Data Collaborative (NMDC) unified data model

microbiomedata/nmdc-schema's past year of commit activity

Python 53 CC0-1.0 16 455 (5 issues need help) 15 Updated Oct 21, 2026
submission-schema Public
The NMDC submission schema

microbiomedata/submission-schema's past year of commit activity

Python 1 MIT 3 37 2 Updated Oct 21, 2026
external-metadata-awareness Public
MongoDB + Parquet analytics for NCBI BioSample/BioProject/SRA and NMDC submission-portal metadata. Environmental triad annotation, harmonized-attribute counts, measurement discovery, value-set voting sheets.

microbiomedata/external-metadata-awareness's past year of commit activity

Jupyter Notebook 2 1 100 6 Updated Oct 21, 2026
nmdc-metadata-suggestor-ai-tool Public
A repository to that holds the code for the NMDC Submission portal metadata suggestor tool, powered by AI

microbiomedata/nmdc-metadata-suggestor-ai-tool's past year of commit activity

Python 2 2 31 7 Updated Oct 21, 2026
nmdc-ai-eval Public
Framework and data for performing evaluations for AI-powered NMDC tools.

microbiomedata/nmdc-ai-eval's past year of commit activity

Python 2 0 45 7 Updated Oct 20, 2026
nmdc-lakehouse-schema Public

microbiomedata/nmdc-lakehouse-schema's past year of commit activity

Python 0 Apache-2.0 0 6 2 Updated Oct 16, 2026

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