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@marbl

MarBL

Maryland Bioinformatics Labs

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  1. CHM13 CHM13 Public

    The complete sequence of a human genome

    1.1k 105

  2. canu canu Public

    A single molecule sequence assembler for genomes large and small.

    C++ 707 181

  3. Krona Krona Public

    Interactively explore metagenomes and more from a web browser.

    JavaScript 503 109

  4. Mash Mash Public

    Fast genome and metagenome distance estimation using MinHash

    C++ 455 97

  5. verkko verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    Python 421 34

  6. merqury merqury Public

    k-mer based assembly evaluation

    Shell 355 25

Repositories

Showing 10 of 47 repositories
  • MetagenomeScope Public

    Visualization tool for (meta)genome assembly graphs

    marbl/MetagenomeScope's past year of commit activity
    Python 50 GPL-3.0 10 176 0 Updated Oct 20, 2026
  • HG002 Public

    A complete diploid human genome

    marbl/HG002's past year of commit activity
    162 5 2 0 Updated Oct 19, 2026
  • ModDotPlot-Browser Public

    Interactive ModDotPlot on the web browser

    marbl/ModDotPlot-Browser's past year of commit activity
    TypeScript 2 MIT-0 0 1 0 Updated Oct 19, 2026
  • KOLF2.1J-Diploid-Assembly Public

    The personalized diploid genome of KOLF iPSC cell line

    marbl/KOLF2.1J-Diploid-Assembly's past year of commit activity
    1 MIT 0 1 0 Updated Oct 12, 2026
  • meryl-utility Public

    A collection of miscellaneous code used by Meryl, Canu and others.

    marbl/meryl-utility's past year of commit activity
    C 1 4 0 0 Updated Oct 10, 2026
  • verkko-fillet Public

    Post-verkko graph and assembly curation in Python.

    marbl/verkko-fillet's past year of commit activity
    Jupyter Notebook 37 MIT 1 9 0 Updated Oct 9, 2026
  • GQC Public

    Python package for comparing genome assemblies and read data to the diploid Q100 benchmark

    marbl/GQC's past year of commit activity
    Python 21 3 1 0 Updated Oct 8, 2026
  • ModDotPlot Public
    marbl/ModDotPlot's past year of commit activity
    Python 204 MIT 11 2 0 Updated Oct 5, 2026
  • T2T-Browser Public

    Genome browser hub for the T2T genomes and resources

    marbl/T2T-Browser's past year of commit activity
    HTML 34 3 0 0 Updated Oct 1, 2026
  • Pooch Public

    POOCH is a Snakemake-based pipeline for assigning chromosome labels and determining the parent of origin (maternal or paternal) of near-complete genome assemblies.

    marbl/Pooch's past year of commit activity
    Python 7 MIT 0 1 0 Updated Sep 27, 2026
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