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JugLab

GitHub for the JugLab

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  1. n2v n2v Public

    This is the implementation of Noise2Void training.

    Python 494 119

  2. EmbedSeg EmbedSeg Public

    Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images

    Python 130 28

  3. FourierImageTransformer FourierImageTransformer Public

    Fourier Image Transformer (FIT) can solve relevant image analysis tasks in Fourier space.

    Python 100 15

  4. pn2v pn2v Public

    This is our implementation of Probabilistic Noise2Void

    Python 78 12

  5. DenoiSeg DenoiSeg Public

    Joint training of denoising and segmentation.

    Jupyter Notebook 76 21

  6. PPN2V PPN2V Public

    Code Implementation for the publication "Fully Unsupervised Probabilistic Noise2Void"

    Python 59 10

Repositories

Showing 10 of 102 repositories
  • eps-Seg Public

    A hierarchical variational autoencoder based method for semantic segmentation of Electron Microscopy data.

    juglab/eps-Seg's past year of commit activity
    Jupyter Notebook 6 BSD-3-Clause 0 3 0 Updated Oct 16, 2026
  • CiliaAI-minicourse Public

    Hands-on exercises for the Cilia-AI / CiliaConnect mini-course on image analysis and AI (denoising with BM3D and Noise2Void)

    juglab/CiliaAI-minicourse's past year of commit activity
    Jupyter Notebook 0 CC-BY-4.0 0 0 0 Updated Oct 7, 2026
  • napari-n2v Public

    A self-supervised denoising algorithm.

    juglab/napari-n2v's past year of commit activity
    Python 31 BSD-3-Clause 5 13 0 Updated Oct 5, 2026
  • MicroSSIM Public

    Range Invariant SSIM

    juglab/MicroSSIM's past year of commit activity
    Jupyter Notebook 3 BSD-3-Clause 0 1 0 Updated Oct 5, 2026
  • lambdaSplit Public

    Self-Supervised Content-Aware Spectral Unmixing for Fluorescence Microscopy

    juglab/lambdaSplit's past year of commit activity
    0 0 0 0 Updated Sep 7, 2026
  • SWITi_reproducibility Public

    Experiments for "SWITi: Quantifying and Reducing Tiling Artifacts with Sliding Window Inner Tiling" (https://arxiv.org/abs/2607.18990)

    juglab/SWITi_reproducibility's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 3, 2026
  • eps-SegFormer Public

    Transformer-based implementation of eps-Seg

    juglab/eps-SegFormer's past year of commit activity
    Python 1 0 0 0 Updated Sep 1, 2026
  • resmatching Public
    juglab/resmatching's past year of commit activity
    Python 0 MIT 1 0 0 Updated Aug 19, 2026
  • HazeMatching Public

    Code for our CVPR 2026 (Findings) paper https://arxiv.org/abs/2506.22397.

    juglab/HazeMatching's past year of commit activity
    Python 6 MIT 2 0 0 Updated Aug 8, 2026
  • TilArtMetrics Public

    Metrics for detection and quantification of tiling artifacts as described in "F. Carrara et al., SWITi: Quantifying and Reducing Tiling Artifacts with Sliding Window Inner Tiling"

    juglab/TilArtMetrics's past year of commit activity
    Python 2 MIT 0 0 0 Updated Jul 27, 2026
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