Cellular Genomics Informatics

Pinned Loading

1. STARsolo STARsolo Public

   wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq

   Shell 96 10

2. reprocess_public_10x reprocess_public_10x Public

   Scripts to help get fastqs

   Shell 20 3

3. c2l c2l Public

   Set of scripts to run cell2location on farm

   Jupyter Notebook 2

4. nf-cellbender nf-cellbender Public

   Nextflow pipeline for CellBender runs

   Python

5. sceasy sceasy Public

   A package to help convert different single-cell data formats to each other

   R 471 68

6. schard schard Public

   reticulate-free single cell format conversion

   R 223 16