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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 399 164

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 27 16

Repositories

Showing 10 of 523 repositories
  • seaad_multiregion_trajectory_viewer Public

    Gene trajectory viewer for the SEA-AD multiregion data set.

    AllenInstitute/seaad_multiregion_trajectory_viewer's past year of commit activity
    R 0 0 1 0 Updated Oct 19, 2026
  • bmtk Public

    Brain Modeling Toolkit

    AllenInstitute/bmtk's past year of commit activity
    Python 338 BSD-3-Clause 102 68 9 Updated Oct 19, 2026
  • mouse-developing-vis-app Public

    App and documentation for viewing data from developing mouse cortex. Useful both on it's own and as an example for how such apps can be made more broadly from ABC Atlas Access data sets.

    AllenInstitute/mouse-developing-vis-app's past year of commit activity
    R 0 0 0 0 Updated Oct 19, 2026
  • ConnectsCommonConnectivity Public

    A repository to organize data models and code for creating a pilot common connectivity matrix for BRAIN CONNECTS

    AllenInstitute/ConnectsCommonConnectivity's past year of commit activity
    Jupyter Notebook 4 MIT 1 27 0 Updated Oct 19, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES's past year of commit activity
    IGOR Pro 30 11 293 9 Updated Oct 19, 2026
  • MultiTaskMPN Public
    AllenInstitute/MultiTaskMPN's past year of commit activity
    Python 2 2 0 0 Updated Oct 19, 2026
  • openscope_databook Public

    OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈

    AllenInstitute/openscope_databook's past year of commit activity
    Python 76 32 6 1 Updated Oct 19, 2026
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    AllenInstitute/neuroglancer's past year of commit activity
    TypeScript 0 Apache-2.0 423 0 1 Updated Oct 19, 2026
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims's past year of commit activity
    Python 0 MIT 1 4 2 Updated Oct 19, 2026
  • FISHsim Public Forked from Roth-Lab/FISHsim
    AllenInstitute/FISHsim's past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Oct 19, 2026
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